Setup-data-libraries¶
Tool to setup data libraries on a galaxy instance
Usage¶
Populate the Galaxy data library with data.
usage: setup-data-libraries [-h] [-v] [-g GALAXY] [-u USER] [-p PASSWORD]
[-a API_KEY] -i INFILE [--training] [--legacy]
Named Arguments¶
- -i, --infile
- --training
Set defaults that make sense for training data.
Default: False
- --legacy
Use legacy APIs even for newer Galaxies that should have a batch upload API enabled.
Default: False
General options¶
- -v, --verbose
Increase output verbosity.
Default: False
Galaxy connection¶
- -g, --galaxy
Target Galaxy instance URL/IP address
Default: “http://localhost:8080”
- -u, --user
Galaxy user email address
- -p, --password
Password for the Galaxy user
- -a, --api-key, --api_key
Galaxy admin user API key (required if not defined in the tools list file)