Setup-data-libraries

Tool to setup data libraries on a galaxy instance

Usage

Populate the Galaxy data library with data.

usage: setup-data-libraries [-h] [-v] [-g GALAXY] [-u USER] [-p PASSWORD]
                            [-a API_KEY] -i INFILE [--training] [--legacy]

Named Arguments

-i, --infile
--training

Set defaults that make sense for training data.

Default: False

--legacy

Use legacy APIs even for newer Galaxies that should have a batch upload API enabled.

Default: False

General options

-v, --verbose

Increase output verbosity.

Default: False

Galaxy connection

-g, --galaxy

Target Galaxy instance URL/IP address

Default: “http://localhost:8080

-u, --user Galaxy user email address
-p, --password Password for the Galaxy user
-a, --api_key Galaxy admin user API key (required if not defined in the tools list file)