Workflow-to-tools

Tool to generate tools from workflows

Usage

usage: workflow-to-tools <options>

Named Arguments

-w, --workflow

A space separated list of galaxy workflow description files in json format

-o, --output-file

The output file with a yml tool list

-l, --panel-label, --panel_label

The name of the panel where the tools will show up in Galaxy.If not specified: “Tools from workflows”

Default: 'Tools from workflows'

-j, --json-panel-label-suggestion, --json_panel_label_suggestion

File path or URL with a json with the default panel_label. For example ‘https://training.galaxyproject.org/api/toolcats.json’

Workflow files must have been exported from Galaxy release 16.04 or newer.

example: python %(prog)s -w workflow1 workflow2 -o mytool_list.yml -l my_panel_label Christophe Antoniewski <drosofff@gmail.com> https://github.com/ARTbio/ansible-artimed/tree/master/extra-files/generate_tool_list_from_ga_workflow_files.py